Less than 4 hours sleep and a long day at work so please forgive my short answers, and thank you for the positive feedback Foodstamp!
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		| On the "Step 1" page there is a section listed as "size". Does checking normal, small and large screen for the map size, or the province size? 
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 Province size.
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		| Is it acceptable to check a terrain type and a site type? 
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 Yes!
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		| I am at a loss on the usage of the climate tag, as well as using the climate settings in the map generator as well, could you give a brief overview on how they work? 
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 Endoperez covered this well.  (Thanks Endo!)
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		| Finally, would it be possible to give us some examples as to what combinations will and will not work in "Step 1" of the province editor? 
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 For examples, look to existing Gan filenames.  Step 1 is all about building the file name with the desired flags.  For a little more help, I will paste the filename flags below:
Code:
GAN FILENAME FLAGS:
-------------------
<Climates>
_HOT_   Hot Zone (southern map)
_CLD_   Cold Zone (northern map)
_TMP_   Temperate Zone (mid map)
<Patterns>
_IS_    ISLAND
_LK_    LAKE
_VC_    VOLCANO
_PN_    PENN
_VL_    VALLEY
_CO_    COAST
_LO_    LOST
<Treatment>
_R_     REPLACE  - (#land)    Set active prov & kill everyone in it. Used to REPLACE randomly placed units.
_A_     ADD      - (#setland) Set active prov.  Units added to existing.
_M_     MULTIPLE - More than one of a single province gan may be added to the map file.
_U_     UNIQUE   - Once a single instance of the province gan is "picked", it can not be picked again.
<Terrain>
_S/L/N_   Small/Large/Normal
_PLN_     Plains
_SEA_     Sea
_WTR_     Some water
_MNT_     Mountain
_SWP_     Swamp
_WST_     Waste
_FST_     Forest
_FRM_     Farm
_MST_     Many Sites
_DEP_     Deep
_CAV_     Cave
_FS_      Fire Site
_AS_      Air Site
_WS_      Water Site
_ES_      Earth Site
_SS_      Astral Site
_DS_      Death Site
_NS_      Nature Site
_BS_      Blood Site
_PS_      Priest Site
_EMT_     Edge Mountain